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I am change keyboard setting next difference to F7. When I run the program again, the settings are not saved.
I run the program from the command line.

"C:\Program Files\ExamDiff Pro\ExamDiff.exe" h:\Temporary_SVN_files\kokes.wxpdfdoc_eifel\Komponenty\wkokes_wxpdfdoc d:\kokes.700\Komponenty\wkokes_wxpdfdoc /fd /fx:*.svn* /fi:*.cpp,*.h

Do I need to specify a settings file on the command line?

Is it possible to edit the global settings of the program to remember the keyboard shortcut for all uses?

You don't need to specify settings in the command line if all you want is to use defaults saved in the last use. Is this reproducible? Is it possible that you had two instances of EDP open, and you made changes in one of them?

psguru wrote: ↑Tue Jan 05, 2021 11:00 am Is this reproducible? Is it possible that you had two instances of EDP open, and you made changes in one of them?

Yes and yes. Directory compare first instance, file compare second instance.
After your advice, I only tried file compare and everything was saved. Thank you. Zdeněk